This site is a prelude to the internationally supported BioCatalogue system that will collect, store, validate, and make available web-services in the biosciences. This registry is mainly meant for the EU projects EMBRACE, BioSapiens and ENFIN, but other users are welcome too. As a potential web service user, you can search or browse the registry for services that match your needs. Furthermore, each entry includes live test data, showing the current and historical status of the service. Each entry can also include example client software to help you include them in your own programs or workflows. As a service provider, the registry helps you build high quality services that conform to industry standards, and gives you a means of advertising your tools to the user community as well as a platform for testing your service. Your service remains your property and published by you - this registry merely advertises its existence and its status.
This system will in due time merge seamlessly into the BioCatalogue, and if you use this registry, you will not have to register your service again with the BioCatalogue.
Recent News
WSxVO_GXD_Features
WSxVO_GXD_Features - Annotations for Gene expression from MGI-GXD related to anatomic terms from EMAP-OBO.
Visual Genomics:
The first part of the project is based on the Edinburgh Mouse Atlas Project (EMAP). This project has been working for more than a decade in the creation of a digital atlas of mouse development and a database that spatially maps in situ gene expression (EMAGE database). Visual Genomics project tries to bring together the multidimensional imaging and the genomics fields to provide an integrated system.
WSxVO_EMAGE_Features
WSxVO_EMAGE_Features - Annotations for Gene expression from EMAGE related to anatomic terms from EMAP-OBO.
Visual Genomics:
The first part of the project is based on the Edinburgh Mouse Atlas Project (EMAP). This project has been working for more than a decade in the creation of a digital atlas of mouse development and a database that spatially maps in situ gene expression (EMAGE database). Visual Genomics project tries to bring together the multidimensional imaging and the genomics fields to provide an integrated system.
WSxVO_EMAP_Reference
WSxVO_EMAP_Reference - Reference for terms from EMAP-OBO digital atlas of mouse development. Contains a set of terms from the for mouse embryo (EMAP) and mouse adult (MA) ontologies plus the mouse central nervous system (GENSAT) vocabulary describing anatomical structures.
Visual Genomics:
WSxVO_MGI_Reference
Visual Genomics:
The first part of the project is based on the Edinburgh Mouse Atlas Project (EMAP). This project has been working for more than a decade in the creation of a digital atlas of mouse development and a database that spatially maps in situ gene expression (EMAGE database). Visual Genomics project tries to bring together the multidimensional imaging and the genomics fields to provide an integrated system.
The Web Services for Visual Omics (WSxVO) system is a client/server system to provide information about gene expression in a standardized manner.
WSx3DEM_EMDB
WSx3DEM_EMDB - Annotation server for 3D-EM volume maps.
WSx3DEM_Reference uses a client-server pattern to provide the structural 3D models maintained at the Electron Microscopy DataBase (EMDB). The 3D-EM models are the reference data where annotations are located representing the known features for a particular macromolecule. Accessing other biological entities is also possible as far as a relation between coordinate systems exists, serving as an alignment method.
This is a first implementation (using Axis2) translating the REST services into SOAP-RPC services.
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