blastProDom

PASSED
137
Service version1.0
Contributor URLhttp://prodom.prabi.fr/prodom/current/documentation/blastProDom.html
WSDL URLhttp://prodom.prabi.fr/prodom/current/wsdl/blastliteral.wsdlPASSED

blastProDom performs a blast (blastx or blastp) on the protein domain family database ProDom : enter a sequence (nucleotides or proteins, raw or fasta format) and it returns a blast output with the name of the families corresponding to the hits found, and a URL to get the image visualizing the blasted domains on the protein.

A perl script is available to run this webservice from your computer. Please install SOAP Lite before.

A description of the WSDL service:

blastprodomService

Namespace: http://prodom.prabi.fr/blastprodom

  • Port: blastprodomPort
  • Location: http://prodom.prabi.fr/prodom/2006.1/cgi-bin/blastprod.cgi
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: document

Operations

blastprod

blastprod alignment: alignment of the family, query: closest sequence to the consensus of the family (got by fetch_blast if needed), bank:data to blast against as fasta format, param: see blastprod help if 'default' will set -j 10 -e 0.01 -h 0.001 Takes an alignment, a bank and a query as input. Returns the standard blast ouput in xml without the 2 first none xml standards lines.

  • SOAP Action: http://prodom.prabi.fr/blastprodom#blastprod
  • Input Message: blastprodRequestMsg
    • inputWrapper
      • blastprod type
        • program type string
          • query type string
            • param type string
        • Output Message: blastprodResponseMsg
          • outputWrapper
            • blastprodResponse type
              • blastprodOut type string
                • blastprodImage type string

            WSDL Changes

            DateDescription of Changes
            8th April 2009First Snapshot
            PASSED

            Test #1: blastProDomTest

            A normal blastprodom output is composed of 2 parts :
            - part1 must contain a blast output (here we check the presence of the domain we are testing, PD0000395)
            - part2 must contain an adress of the form http://prodom.prabi.fr/prodom/...

            Submitted by lauranne.duquenne on Mon, 10/20/2008 - 15:31
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            You are not hearing the

            Submitted by adel on Tue, 06/01/2010 - 06:40.

            You are not hearing the 150kHz directly, you are hearing effects of the PWM tracking for controlling the output voltage. You say you are using a shielded inductor 312-49 dumps with potting, so that's probably where the noise is coming from -- the interface between the two parts (inductor and shield).312-50 dumps Try using an unshielded inductor to see if the noise goes away. If you need a shielded inductor for that part for testking 350-001 other reasons, try using a toroidal inductor instead (it is self-shielding for generating external B-fields, 350-030 dumps not for being immune to external interfering B-fields).

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