CSTminer

PASSED
151
Service version1.0
Contributor URLhttp://bcc20.caspur.it/BioWStool/ws.php?dir=Similarity_Searches&ws=CST.jws
WSDL URLhttp://dl301o22.caspur.it:8080/axis/webservices/Similarity_Searches/CST.jws?WSDLFAILED Show/Hide Details

Execute CSTminer, the algorithm for the identification of coding and non coding conserved sequence tags through the comparison of two genomic sequences.

Method CSTfinder;

Parameters string seq1, string seq2;

Description Execute CSTminer between two genomic sequences.
(Example: GGGACGCCCGGGCGGCCCTGAAGG - GGTGGATCCTCCAACCCGCTCCCATA)

Perl client ( http://bcc20.caspur.it/BioWStool/makePL.php?dir=Similarity_Searches&ws=C... )

run the client: perl CSTClient.pl method_name file_in file_out

Dependencies: To run the Perl client you need to install SOAP::Lite. SOAP::Lite is a collection of Perl modules which provides a simple and lightweight interface to SOAP both on client and server side.

To get usage information run without arguments:
perl CSTClient.pl

Java client ( http://bcc20.caspur.it/BioWStool/makeJAVA.php?dir=Similarity_Searches&ws... )

run the client: java -jar CSTClient.jar method_name file_in file_out

Dependencies: To run the Java client you need to download these jar zipped files. Include these files in your CLASSPATH variable.

To get usage information run without arguments:
java -jar CSTClient.jar

A description of the WSDL service:

CSTService

Namespace: http://dl301o22.caspur.it:8080/axis/webservices/Similarity_Searches/CST.jws

  • Port: CST
  • Location: http://dl301o22.caspur.it:8080/axis/webservices/Similarity_Searches/CST.jws
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: rpc

Operations

getDescription

  • SOAP Action:
  • Input Message: getDescriptionRequest
    • Output Message: getDescriptionResponse
      • getDescriptionReturn
        • ArrayOf_xsd_anyType

    resourcePath

    • SOAP Action:
    • Input Message: resourcePathRequest
      • Output Message: resourcePathResponse
        • resourcePathReturn
          • string

      getMethodDescription

      • SOAP Action:
      • Input Message: getMethodDescriptionRequest
        • name
          • string
      • Output Message: getMethodDescriptionResponse
        • getMethodDescriptionReturn
          • ArrayOf_xsd_anyType

      getInputDescription

      • SOAP Action:
      • Input Message: getInputDescriptionRequest
        • name
          • string
      • Output Message: getInputDescriptionResponse
        • getInputDescriptionReturn
          • ArrayOf_xsd_anyType

      getMethodExample

      • SOAP Action:
      • Input Message: getMethodExampleRequest
        • name
          • string
      • Output Message: getMethodExampleResponse
        • getMethodExampleReturn
          • ArrayOf_xsd_anyType

      getInputExample

      • SOAP Action:
      • Input Message: getInputExampleRequest
        • name
          • string
      • Output Message: getInputExampleResponse
        • getInputExampleReturn
          • ArrayOf_xsd_anyType

      CSTfinder

      • SOAP Action:
      • Input Message: CSTfinderRequest
        • seq1
          • string
        • seq2
          • string
      • Output Message: CSTfinderResponse
        • CSTfinderReturn
          • ArrayOf_xsd_anyType

      available

      • SOAP Action:
      • Input Message: availableRequest
        • Output Message: availableResponse
          • availableReturn
            • boolean

        WSDL Changes

        DateDescription of Changes
        8th April 2009First Snapshot
        PASSED

        Test #1: CSTminer test

        This test (written in PERL and called CSTClient.pl) is useful to test the most important method: CSTfinder.
        In order to launch the script, it must be installed the package SOAP::Lite.

        Submitted by itb-bari on Tue, 11/04/2008 - 10:59
        »