EMBOSS sixpack

470

Display a DNA sequence with 6-frame translation and ORFs

A description of the WSDL service:

sixpackService

Namespace: http://soaplab.ebi.ac.uk/display/sixpack

Display a DNA sequence with 6-frame translation and ORFs

starts a job and returns its job identifier that can be used by the getStatus and the getResults methods

SOAP Action:
Input Message: run
- run
  - run type appInputs
    - sequence type sequenceInput
      - direct_data type string
      - usa type string
      - sformat type SequenceFormat
        restriction type string
      - sbegin type long
      - send type long
      - sprotein type boolean
      - snucleotide type boolean
      - sreverse type boolean
      - slower type boolean
      - supper type boolean
    - table type
      - restriction type string
    - firstorf type boolean
    - lastorf type boolean
    - mstart type boolean
    - reverse type boolean
    - orfminsize type
      - restriction type long
    - uppercase type string
    - highlight type string
    - number type boolean
    - width type
      - restriction type long
    - length type
      - restriction type long
    - margin type
      - restriction type long
    - name type boolean
    - description type boolean
    - offset type long
    - html type boolean
    - osformat_outseq type
      - restriction type string
Output Message: runResponse
- runResponse
  - runResponse type string

starts a job, waits until it is completed and returns the job results

SOAP Action:
Input Message: runAndWaitFor
- runAndWaitFor
  - runAndWaitFor type appInputs
    - sequence type sequenceInput
      - direct_data type string
      - usa type string
      - sformat type SequenceFormat
        restriction type string
      - sbegin type long
      - send type long
      - sprotein type boolean
      - snucleotide type boolean
      - sreverse type boolean
      - slower type boolean
      - supper type boolean
    - table type
      - restriction type string
    - firstorf type boolean
    - lastorf type boolean
    - mstart type boolean
    - reverse type boolean
    - orfminsize type
      - restriction type long
    - uppercase type string
    - highlight type string
    - number type boolean
    - width type
      - restriction type long
    - length type
      - restriction type long
    - margin type
      - restriction type long
    - name type boolean
    - description type boolean
    - offset type long
    - html type boolean
    - osformat_outseq type
      - restriction type string
Output Message: runAndWaitForResponse
- runAndWaitForResponse
  - runAndWaitForResponse type appResults
    - report type string
    - detailed_status type long
    - outfile type string
    - outfile_url type string
    - outseq type string
    - outseq_url type string

Date	Description of Changes
8th April 2009	First Snapshot
30th April 2009	Service namespace changed to: http://soaplab.ebi.ac.uk/display/sixpack Operation named run - Input message part type has changed Operation named runAndWaitFor - Input message part type has changed Operation named runAndWaitFor - Output message part type has changed

derived from EMBOSS QA tests

Submitted by soaplab on Fri, 04/03/2009 - 17:06