Services Summary

Titlesort icon Created Bysort icon Datesort icon Tags Recent uptimesort icon
Palign stockholm_dbb 15/12/08 EMBRACE, pairwise alignment, protein sequence, protein sequence 90 %
NetChop - Prediction of proteasomal cleavages (MHC ligands) rapacki 23/04/09 MHC class I pathway, Other, Proteasomal cleavage, CBS-DTU, protein sequence 89 %
NetGlycate - Prediction of glycation of ε amino groups of lysines in mammalian proteins rapacki 23/04/09 EMBRACE, Glycation, Mammalia, protein sequence, CBS-DTU, protein sequence 89 %
MaxAlign - a tool to remove sequences (taxa) with many gaps in the post-process of alignments in order to improve the alignment rapacki 06/05/09 EMBRACE, gaps in alignment, phylogenetic analysis, CBS-DTU, protein sequence 88 %
Genome Atlas pfhallin 06/05/09 Databases of complete prokaryotic genome sequences, DNA sequence, EMBRACE, Genome Atlases, CBS-DTU 85 %
HitKeeper heinz 27/08/08 EMBRACE, protein sequence 83 %
BLASTatlas pfhallin 06/05/09 DNA sequence, EMBRACE, CBS-DTU, protein sequence 80 %
NetCTL - Prediction of CTL epitopes in protein sequences rapacki 23/04/09 EMBRACE, Epitope, Immunology, MHC binding, T cell, CBS-DTU, protein sequence 80 %
PRODIV-TMHMM stockholm_dbb 15/12/08 EMBRACE, membrane protein, protein sequence, protein structure, topology, protein sequence 78 %
TOPCONS stockholm_dbb 11/12/08 EMBRACE, membrane protein, prediction, protein, structure, topology, protein sequence 75 %
Pdb fix stockholm_dbb 12/12/08 EMBRACE, protein structure, molecular structure 74 %
WHAT IF Web Services maarten 28/01/10 BioSapiens, EMBRACE, molecular structure, protein sequence, Other 71 %
GeneWiz pfhallin 08/05/09 DNA properties, DNA sequence, EMBRACE, Genome Visualization, CBS-DTU 68 %
mprap stockholm_dbb 20/04/10 accessibility, EMBRACE, protein sequence 67 %
TOPCOMP stockholm_dbb 17/12/08 classification, EMBRACE, PDB, protein, protein sequence 67 %
ZPRED stockholm_dbb 15/09/08 EMBRACE, structure prediction; z-coordinate; membrane, protein sequence 67 %
ProQ stockholm_dbb 11/12/08 EMBRACE, protein structure, Quality assessment, molecular structure 64 %
Pfrag stockholm_dbb 12/12/08 EMBRACE, Homology modelling, protein structure, molecular structure 63 %
NetOGlyc - Prediction of o-GalNAc (mucin type) glycosylation sites in mammalian proteins rapacki 23/04/09 EMBRACE, Mammalia, Mucin type O-glycosylation sites, CBS-DTU, protein sequence 50 %
RNAmmer pfhallin 19/09/08 DNA sequence, EMBRACE, gene prediction, Hidden Markov Model, HMM, rRNA, RNA sequence 50 %
Pcons.net stockholm_dbb 10/12/08 EMBRACE, protein structure, Quality assessment, molecular structure 29 %
AffyDEGFinder taavi 19/11/08 affymetrix, chipster, differentially expressed genes, EMBRACE, example, finding, microarray, Other 0 %
AIDA document retrieval service mroos 09/09/08 Other, Text mining, text mining 0 %
BioMart - REST and SOAP biomart 04/11/08 DNA sequence, EMBRACE, protein sequence, Other, EBI 0 %
BLAST (DDBJ) dave 07/11/08 blast, Other, protein sequence, UMAN 0 %
BLAST blastp protein similarity search (CNRS IBCP) cblanchet 19/09/08 EMBRACE, sequence similarity, protein sequence 0 %
BLASTn at SIB (nucleotide query sequence(s) against a nucleotide database) smoretti 04/11/08 blast, DNA sequence, e-value, EMBRACE, evalue, NCBI, nucleotide, pairwise alignment, search, SIB, Similarity 0 %
BLASTp at SIB (protein query sequence(s) against protein database) smoretti 04/11/08 blast, e-value, EMBRACE, evalue, NCBI, pairwise alignment, protein, search, SIB, Similarity, swissprot, trembl, uniprot, uniref, protein sequence 0 %
blastProDom lauranne.duquenne 20/10/08 EMBRACE, protein sequence, INRIA-UCBL 0 %
BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database) smoretti 04/11/08 blast, DNA sequence, e-value, EMBRACE, evalue, NCBI, nucleotide, pairwise alignment, protein, search, SIB, Similarity 0 %
Calculate Molecular Similarity. egonw 04/11/08 cheminformatics, Other, Similarity, tanimoto, molecular structure 0 %
Calculate QSAR descriptors. egonw 04/11/08 cheminformatics, Other, QSAR, molecular structure 0 %
CATH/Gene3D Database Lookup Services sillitoe 09/01/09 domain, EC, EMBRACE, FunCat, GO, HMM, KEGG, lookup, mapping, PDB, sequence family, superfamily, uniprot, molecular structure, protein sequence, Other 0 %
CATH/Gene3D HMMScan (draft WSDL) andrew.clegg 20/11/08 CATH, EMBRACE, Gene3D, Hidden Markov Model, HMM, protein, search, sequence, Similarity, protein sequence 0 %
CATHEDRAL (Draft WSDL) andrew.clegg 20/11/08 CATH, EMBRACE, protein, search, Similarity, structure, molecular structure 0 %
CLUSTAL W multiple alignment (CNRS IBCP) cblanchet 19/09/08 EMBRACE, multiple alignment, protein sequence 0 %
CMC itb-bari 06/05/09 Clustering, microarray, non-parametric, Other, Other, ITB 0 %
CODA (using CATH domains) andrew.clegg 04/11/08 comparison, domain architecture, domain fission, domain fusion, EMBRACE, evolution, FuncNet, function, prediction, protein, sequence, protein sequence 0 %
CODA (using Pfam domains) andrew.clegg 04/11/08 comparison, domain architecture, domain fission, domain fusion, EMBRACE, evolution, FuncNet, function, prediction, protein, sequence, protein sequence 0 %
COILS predict protein coiled-coil regions (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 0 %
CONSENSUS of protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 0 %
ConsensusPathDB pathway analysis MPIMG_bioinf 25/04/12 EMBRACE, expression data analysis, pathway analysis, pathway integration, ppi, Other, MPIMG 0 %
CorEx nudelg01 05/05/10 Other, Other, Other 0 %
CRONOS: the cross-reference navigation server dullhunk 19/11/08 cross-reference, mapping, Other, Other 0 %
CSTminer itb-bari 04/11/08 coding, conserved sequences, DNA sequence, non-coding, Other 0 %
DASx3DEM jrmacias 24/09/08 3D-Electron Microscopy, Distributed Annotation System, EMBRACE, Hybrid models, molecular structure, CSIC 0 %
DASxVO jrmacias 20/11/08 anatomical structure, EMBRACE, Gene expression, ontology, Other, CSIC 0 %
DSC protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, secondary structure, protein sequence 0 %
DSSP dave 27/08/08 EMBRACE, secondary structure, molecular structure 0 %
EasyGene - Prediction of genes in prokaryotes rapacki 05/05/09 DNA sequence, EMBRACE, gene prediction, prokaryotic DNA, CBS-DTU 0 %