ConsensusPathDB is a database that integrates pathway and interaction resources like Reactome, HumanCyc, IntAct, Pathway Interaction Database and others. ConsensusPathDB contains biochemical reactions, protein interactions, genetic interactions, gene regulatory interactions and drug-target interactions involving different types of physical entities like genes, RNA, proteins, complexes, metabolites. The provided web services offer pathway analysis functionality for user-specified lists of genes or metabolites. For detailed information, please read:
This service converts a network in gml, gdl, KGML or tab-delimited format into a network in gml, gdl, pajek, tab-delimited, dot or VisML format.
The KEGG network provider constructs organism-specific metabolic networks from the KEGG PATHWAY KGML files.
The pathway extraction service connects groups of seed nodes in a weighted graph.
The pathfinding service enumerates the k shortest paths between a set of source and target nodes in a weighted graph. It is a wrapper of REA developped by Jimenez and Marzal.