EMBRACE

WSxVO_GXD_Features - Annotations for Gene expression from MGI-GXD related to anatomic terms from EMAP-OBO.

Visual Genomics:

The first part of the project is based on the Edinburgh Mouse Atlas Project (EMAP). This project has been working for more than a decade in the creation of a digital atlas of mouse development and a database that spatially maps in situ gene expression (EMAGE database). Visual Genomics project tries to bring together the multidimensional imaging and the genomics fields to provide an integrated system.

WSxVO_EMAGE_Features - Annotations for Gene expression from EMAGE related to anatomic terms from EMAP-OBO.

Visual Genomics:

The first part of the project is based on the Edinburgh Mouse Atlas Project (EMAP). This project has been working for more than a decade in the creation of a digital atlas of mouse development and a database that spatially maps in situ gene expression (EMAGE database). Visual Genomics project tries to bring together the multidimensional imaging and the genomics fields to provide an integrated system.

WSxVO_EMAP_Reference - Reference for terms from EMAP-OBO digital atlas of mouse development. Contains a set of terms from the for mouse embryo (EMAP) and mouse adult (MA) ontologies plus the mouse central nervous system (GENSAT) vocabulary describing anatomical structures.

Visual Genomics:

Visual Genomics:

The first part of the project is based on the Edinburgh Mouse Atlas Project (EMAP). This project has been working for more than a decade in the creation of a digital atlas of mouse development and a database that spatially maps in situ gene expression (EMAGE database). Visual Genomics project tries to bring together the multidimensional imaging and the genomics fields to provide an integrated system.

The Web Services for Visual Omics (WSxVO) system is a client/server system to provide information about gene expression in a standardized manner.

WSx3DEM_EMDB - Annotation server for 3D-EM volume maps.

WSx3DEM_Reference uses a client-server pattern to provide the structural 3D models maintained at the Electron Microscopy DataBase (EMDB). The 3D-EM models are the reference data where annotations are located representing the known features for a particular macromolecule. Accessing other biological entities is also possible as far as a relation between coordinate systems exists, serving as an alignment method.

This is a first implementation (using Axis2) translating the REST services into SOAP-RPC services.