BioSapiens

WHAT IF Web Services

PASSED

WHAT-IF Web Services, see http://swift.cmbi.ru.nl/whatif and http://wiws.cmbi.ru.nl/help for more information.

Submitted by maarten on Thu, 01/28/2010 - 15:11
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retrieve_ensembl_seq

WARNING

Part of the Regulatory Sequence Analysis Tools (RSAT).
Returns upstream, downstream, intronic, exonic, UTR or gene sequences for a list of genes from the EnsEMBL database.

Submitted by olisand on Mon, 09/29/2008 - 16:40
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TRAP

As yet this is untested.

TRAP is a program that detects the binding affinity of a Transcription Factors(TFs) for a DNA sequence.

Given a list of Gene sequences (or Ensembl IDs), the program calculates the binding affinity of a
list of TF's (Transfac matrices) for the supplied Genes.

The user is returned a list of TF's ranked by affinity score for each gene supplied.

Submitted by sean on Fri, 09/19/2008 - 12:45
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purge_seq

WARNING

Part of the Regulatory Sequence Analysis Tools (RSAT).
Mask redundant fragments in a sequence.

Submitted by olisand on Tue, 09/02/2008 - 17:04
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matrix_scan

PASSED

Part of the Regulatory Sequence Analysis Tools (RSAT).

Submitted by olisand on Tue, 09/02/2008 - 15:34
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