test1
This is a test of the EMBOSS pepcoil service.
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Support reference#637-638
derived from EMBOSS QA tests
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view log 4 days agoFAILED
Test began: 2013-06-15 12:41:08 Test ended: 2013-06-15 12:41:23 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepcoil?wsdl": Resource temporarily unavailable at ./pepcoil.pl line 20.Download this log...
view log 4 weeks agoFAILED
Test began: 2013-05-25 10:20:46 Test ended: 2013-05-25 10:20:47 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepcoil?wsdl": Resource temporarily unavailable at ./pepcoil.pl line 20.Download this log...
view log 2 months agoFAILED
Test began: 2013-04-29 06:15:35 Test ended: 2013-04-29 06:15:36 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepcoil?wsdl": Resource temporarily unavailable at ./pepcoil.pl line 20.Download this log...
view log 3 months agoFAILED
Test began: 2013-03-30 21:44:38 Test ended: 2013-03-30 21:44:38 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepcoil?wsdl": Resource temporarily unavailable at ./pepcoil.pl line 20.Download this log...
view log 3 months agoFAILED
Test began: 2013-03-15 06:38:09 Test ended: 2013-03-15 06:38:25 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepcoil?wsdl": Resource temporarily unavailable at ./pepcoil.pl line 20.Download this log...
view log 4 months agoFAILED
Test began: 2013-02-27 15:01:02 Test ended: 2013-02-27 15:01:03 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepcoil?wsdl": Resource temporarily unavailable at ./pepcoil.pl line 20Download this log...
view log 4 months agoFAILED
Test began: 2013-02-24 10:46:07 Test ended: 2013-02-24 10:46:07 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepcoil?wsdl": Resource temporarily unavailable at ./pepcoil.pl line 20Download this log...
view log 5 months agoFAILED
Test began: 2013-01-31 21:42:16 Test ended: 2013-01-31 21:42:32 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Erroneously Termination status: 1 Started: 2013-Jan-31 22:22:03 (GMT) Ended: 2013-Jan-31 22:22:04 (GMT) Duration: 0:00:00.593 Report: Name: protein_2d_structure.pepcoil Job ID: [protein_2d_structure.pepcoil]7ea288dd.13846ccecfd._2cee Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/pepcoil -sequence swissprot:gcn4_yeast -outfile o_outfile -auto --- end of parameters Exit code: 1 FailedDownload this log...
view log 8 months agoPASSED
Test began: 2012-10-13 18:22:12 Test ended: 2012-10-13 18:22:29 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Oct-13 18:54:35 (BST) Ended: 2012-Oct-13 18:54:52 (BST) Duration: 0:00:16.667 Report: Name: protein_2d_structure.pepcoil Job ID: [protein_2d_structure.pepcoil]_85ca7b7.13a31930bb2._7d3e Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/pepcoil -sequence swissprot:gcn4_yeast -outfile o_outfile -auto --- end of parameters Exit code: 0 PassedDownload this log...
view log 10 months agoPASSED
Test began: 2012-08-23 04:09:56 Test ended: 2012-08-23 04:09:58 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Aug-23 04:38:58 (BST) Ended: 2012-Aug-23 04:38:59 (BST) Duration: 0:00:01.481 Report: Name: protein_2d_structure.pepcoil Job ID: [protein_2d_structure.pepcoil]7ea288dd.13846ccecfd._656e Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/pepcoil -sequence swissprot:gcn4_yeast -outfile o_outfile -auto --- end of parameters Exit code: 0 PassedDownload this log...
This test consists of the following files:
pepcoil.pl
#!/usr/bin/perl
use XML::Compile::SOAP11;
use XML::Compile::WSDL11;
use XML::Compile::Transport::SOAPHTTP;
use strict;
####
eval {
my $inputs = {
'sequence' => { 'usa' => 'swissprot:gcn4_yeast'}
};
my $serviceendpoint =
'http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepcoil';
print "Retriving and processing the WSDL and the XSDs imported\n";
my $wsdl = XML::LibXML->new->parse_file( $serviceendpoint . '?wsdl' );
my $proxy = XML::Compile::WSDL11->new($wsdl);
foreach my $schema ( 1, 2, 3 ) {
my $xsdXml =
XML::LibXML->new->parse_file( $serviceendpoint . '?xsd=' . $schema );
if($XML::Compile::SOAP::VERSION < 2.0)
{
$proxy->schemas->importDefinitions($xsdXml);
}
else
{
$proxy->importDefinitions($xsdXml);
}
}
print "Preparing caller object for runAndWaitFor operation\n";
my $runAndWaitFor = $proxy->compileClient('runAndWaitFor');
print "Calling the service and getting the response\n";
my ( $answer, $trace ) = $runAndWaitFor->( $inputs );
# &printTrace($trace);
my %answer = %{$answer};
my %answer_ = %{ $answer{'runAndWaitForResponse'} };
my $report = $answer_{'report'};
my $detailed_status = $answer_{'detailed_status'};
my $outfile = $answer_{'outfile'};
my $outfile_url = $answer_{'outfile_url'};
print "\nSoaplab report received:\n----------------------------\n\n$report\n";
if ( $detailed_status == 0 ) {
print "Passed\n";
exit 0;
}
print "Failed\n";
exit 1;
};
if ($@) {
print "Caught an exception\n" . $@;
exit 1;
}
# Print request/response trace
sub printTrace($) {
my $trace = shift;
$trace->printTimings;
$trace->printRequest;
$trace->printResponse;
}
# File to String
sub file2String($) {
my $fname = shift;
open FILE, $fname or die "Couldn't open file: $!";
my $fcontent = join( "", <FILE> );
close FILE;
return $fcontent;
}
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