test1
This is a test of the EMBOSS shuffleseq service.
Test filesDownload the files for this test
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Support reference#594-595
derived from EMBOSS QA tests
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view log 6 days agoFAILED
Test began: 2013-05-15 15:42:19 Test ended: 2013-05-15 15:42:19 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq?wsdl": Resource temporarily unavailable at ./shuffleseq.pl line 21.Download this log...
view log 6 days agoFAILED
Test began: 2013-05-15 14:22:23 Test ended: 2013-05-15 14:22:23 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq?wsdl": Resource temporarily unavailable at ./shuffleseq.pl line 21.Download this log...
view log 4 weeks agoFAILED
Test began: 2013-04-26 20:54:50 Test ended: 2013-04-26 20:54:50 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq?wsdl": Resource temporarily unavailable at ./shuffleseq.pl line 21.Download this log...
view log 1 month agoFAILED
Test began: 2013-04-11 20:56:34 Test ended: 2013-04-11 20:56:35 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq?wsdl": Resource temporarily unavailable at ./shuffleseq.pl line 21.Download this log...
view log 2 months agoFAILED
Test began: 2013-04-04 06:07:33 Test ended: 2013-04-04 06:07:34 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq?wsdl": Resource temporarily unavailable at ./shuffleseq.pl line 21.Download this log...
view log 2 months agoFAILED
Test began: 2013-03-31 23:47:56 Test ended: 2013-03-31 23:47:57 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq?wsdl": Resource temporarily unavailable at ./shuffleseq.pl line 21.Download this log...
view log 2 months agoFAILED
Test began: 2013-03-31 22:18:15 Test ended: 2013-03-31 22:18:15 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq?wsdl": Resource temporarily unavailable at ./shuffleseq.pl line 21.Download this log...
view log 2 months agoFAILED
Test began: 2013-03-13 19:47:55 Test ended: 2013-03-13 19:47:55 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq?wsdl": Resource temporarily unavailable at ./shuffleseq.pl line 21.Download this log...
view log 3 months agoFAILED
Test began: 2013-03-01 22:25:33 Test ended: 2013-03-01 22:25:33 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq?wsdl": Resource temporarily unavailable at ./shuffleseq.pl line 21Download this log...
view log 3 months agoFAILED
Test began: 2013-02-27 13:01:20 Test ended: 2013-02-27 13:01:36 Result : Test failure ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Caught an exception Could not create file parser context for file "http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq?wsdl": Resource temporarily unavailable at ./shuffleseq.pl line 21Download this log...
This test consists of the following files:
shuffleseq.pl
#!/usr/bin/perl
use XML::Compile::SOAP11;
use XML::Compile::WSDL11;
use XML::Compile::Transport::SOAPHTTP;
use strict;
####
eval {
my $inputs = {
'shuffle' => '2',
'sequence' => { 'usa' => 'embl:L48662'}
};
my $serviceendpoint =
'http://www.ebi.ac.uk/soaplab/typed/services/nucleic_mutation.shuffleseq';
print "Retriving and processing the WSDL and the XSDs imported\n";
my $wsdl = XML::LibXML->new->parse_file( $serviceendpoint . '?wsdl' );
my $proxy = XML::Compile::WSDL11->new($wsdl);
foreach my $schema ( 1, 2, 3 ) {
my $xsdXml =
XML::LibXML->new->parse_file( $serviceendpoint . '?xsd=' . $schema );
if($XML::Compile::SOAP::VERSION < 2.0)
{
$proxy->schemas->importDefinitions($xsdXml);
}
else
{
$proxy->importDefinitions($xsdXml);
}
}
print "Preparing caller object for runAndWaitFor operation\n";
my $runAndWaitFor = $proxy->compileClient('runAndWaitFor');
print "Calling the service and getting the response\n";
my ( $answer, $trace ) = $runAndWaitFor->( $inputs );
# &printTrace($trace);
my %answer = %{$answer};
my %answer_ = %{ $answer{'runAndWaitForResponse'} };
my $report = $answer_{'report'};
my $detailed_status = $answer_{'detailed_status'};
my $outseq = $answer_{'outseq'};
my $outseq_url = $answer_{'outseq_url'};
print "\nSoaplab report received:\n----------------------------\n\n$report\n";
if ( $detailed_status == 0 ) {
print "Passed\n";
exit 0;
}
print "Failed\n";
exit 1;
};
if ($@) {
print "Caught an exception\n" . $@;
exit 1;
}
# Print request/response trace
sub printTrace($) {
my $trace = shift;
$trace->printTimings;
$trace->printRequest;
$trace->printResponse;
}
# File to String
sub file2String($) {
my $fname = shift;
open FILE, $fname or die "Couldn't open file: $!";
my $fcontent = join( "", <FILE> );
close FILE;
return $fcontent;
}
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